miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164367750|gb|EV485175.1|EV485175 CAGGATCAACATGAAGGGAGTGTAATCCAAGTCAGATACTAAGAGCTCCAGGCTCGCCGTGAACAAGAAATCTAGCGCCA
AAGCTGGAAAGAAATCGGGGAAGGCGGCTAAGGATCCAAACAAGCCAAAGAGGCCTGCTAGTGCCTTCTTCGTTTTCATG
GAGGAGTTCCGTGAGCAATACAAGAAGGAACACCCAAAAAACAAATCTGTCGCTGCTGTGGGCAAAGCTGGTGGAGAAAA
ATGGAAGAGCTTGTCTGATGCTGAAAAAGCACCTTATATAGCAAAGGCAGAGAAGCGAAAGGTCGAGTATGAAAAGAACA
TGAAGGCCTACACTAAGAGACAGGCTGAGGCTCCCAAAGAAGAAGAGTCGGAGTCTGAGAAGTCGGTGTCTGAGGTGAAT
GATGAGGAGGATGAGGACGATGAAGAAGGCAGCGGAGAGGAAGAAGATGATGACTAAGAAGGAAGGAAGACTTGTGGGAG
GAGAGATAGCATAACGAAGTAGGCTGGTGCTTAATTGCTTATATGTTAATGCTTTTGATTGTCCCATGTTATTCTCTCTA
GATGGGCATATGCATGTCATCTAAATGGAAGAAAAATGTACCTCTTAATCCTCTTAATTTCTTCGAACTTTAAGAAATTA
TAGTTGTAATTGTGGCAGATTGTGCATATATATTGTAACTTGATTTAACGTTAAAATGTTTGTAAATTCTTTTTATTTGA
AAAAAAAAAAAAAAATCTAGGGGC




Most similar to sp|P93047|HMGB3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P93047|HMGB3_ARATH High mobility group B protein 3
           OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1
          Length = 141

 Score =  154 bits (390), Expect = 5e-37
 Identities = 77/115 (66%), Positives = 90/115 (78%)
 Frame = +2

Query: 11  MKGV*SKSDTKSSRLAVNXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKE 190
           MKG  SK++T+S++L+V                 DPNKPKRP+SAFFVFME+FR  YK+E
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKGAAK----DPNKPKRPSSAFFVFMEDFRVTYKEE 56

Query: 191 HPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAEKRKVEYEKNMKAYTKRQAEAP 355
           HPKNKSVAAVGKAGGEKWKSLSD+EKAPY+AKA+KRKVEYEKNMKAY K+  E P
Sbjct: 57  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGP 111